You are listening to season five of
Introduction Voiceover:Future Ecologies.
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Mendel Skulski:futureecologies.net/patrons Okay, that's all. On to part two
Mendel Skulski:of Spiders Song.
Mendel Skulski:Welcome back. My name is Mendel.
Adam Huggins:And I'm Adam.
Mendel Skulski:And this is Future Ecologies. Today, in
Mendel Skulski:Spiders Song Part Two, we're taking our seats in the concert
Mendel Skulski:hall of life — audience to the grand dance of evolution, with
Mendel Skulski:taxonomist, phylogenetic theoretician, and jumping spider
Mendel Skulski:devotee Wayne Maddison.
Wayne Maddison:Hi. Good to be back.
Adam Huggins:In other words, we are jumping in right where we
Adam Huggins:left off.
Mendel Skulski:So do you want to give us a quick recap?
Adam Huggins:Sure. Jumping spiders are basically like tiny,
Adam Huggins:eight legged, big eyed cats, slash birds of paradise — in
Adam Huggins:that there are bedazzled males that court mates by dancing. And
Adam Huggins:also by singing! In a manner of speaking... they vibrate.
Mendel Skulski:Yeah, go on.
Adam Huggins:And not only are their species really diverse in
Adam Huggins:shape, and color, they also demonstrate a lot of convergent
Adam Huggins:evolutionary patterns, which are not limited to independently and
Adam Huggins:repeatedly developing color vision, ever more complex
Adam Huggins:courtship rituals, a bunch of them have become ant-like, and
Adam Huggins:there's something going on with their Y chromosomes.
Mendel Skulski:Yeah, mostly. The Y chromosome thing is
Mendel Skulski:actually just the one genus Habronattus, not all jumping
Mendel Skulski:spiders. But it'll be important later on, I promise.
Mendel Skulski:Where we left off in Part One, Wayne was overcome by his sense
Mendel Skulski:of awe — that evolution isn't just an endless chaos of
Mendel Skulski:diversity. It seems to cohere around certain patterns, motifs,
Mendel Skulski:melodies, themes and variations. It seemed to him like the
Mendel Skulski:grandest possible symphony. If only he could hear it.
Wayne Maddison:And at first, I didn't know what to do with
Wayne Maddison:that. But then I thought "Oh! I'm a computer programmer. I do
Wayne Maddison:visualizations of change on phylogenetic trees. Why don't I
Wayne Maddison:program a sonification of change on trees?"
Adam Huggins:I'm assuming what a visualization is to our eyes,
Adam Huggins:a sonification would be to our ears.
Mendel Skulski:Yeah. sonification is like
Mendel Skulski:transmogrifying data into sound. In the same way that you might
Mendel Skulski:turn that same data into a graph. Sonification is the
Mendel Skulski:auditory equivalent.
Adam Huggins:So last episode, we were figuratively talking
Adam Huggins:about how evolution is a form of music. And now you're talking
Adam Huggins:about literally making evolutionary patterns into
Adam Huggins:music.
Mendel Skulski:Yeah, exactly. So, this practice of
Mendel Skulski:sonification has been used to explore and communicate climate
Mendel Skulski:data, X-ray astrophotography, prime numbers, and even
Mendel Skulski:sequences of DNA itself.
Mendel Skulski:But what Wayne is talking about here is sonifying a phylogeny —
Mendel Skulski:an entire family tree of many organisms.
Wayne Maddison:A phylogenetic tree is a statement about the
Wayne Maddison:history of lineages in the past. And we can't actually go back in
Wayne Maddison:a time machine and see those lineages, so we have to
Wayne Maddison:reconstruct it. And we can reconstruct it with lots of
Wayne Maddison:data, occasionally through fossils. But mostly nowadays, we
Wayne Maddison:use genetic data to reconstruct these trees. And it's pretty
Wayne Maddison:clear, we're doing a pretty good job of it, because we've got so
Wayne Maddison:much data that's all speaking to the same phylogenetic tree. But
Wayne Maddison:nonetheless, it's still a hypothesis.
Mendel Skulski:So to draw a phylogenetic tree, they have to
Mendel Skulski:gather specimens, sample their DNA, and assess them for
Mendel Skulski:different characteristics, like which ones have Y chromosomes.
Mendel Skulski:Then they use some of the statistical tools that Wayne
Mendel Skulski:developed to create an estimate of who branched off from who,
Mendel Skulski:and what the characteristics of those ancestors were most likely
Mendel Skulski:to be.
Adam Huggins:So like, if a scientist took you and me, they
Adam Huggins:could cast back and figure out who our most recent common
Adam Huggins:ancestor was and what traits they might have had — based on
Adam Huggins:what you know about us, and maybe some fossils.
Mendel Skulski:And some DNA.
Adam Huggins:Yeah and a computer program. Okay.
Mendel Skulski:Yeah. So so after they've done that, they
Mendel Skulski:have a sequence of all these different lineages, starting
Mendel Skulski:from a common root, and then branching and changing through
Mendel Skulski:time.
Wayne Maddison:But what would it sound like? Would we hear
Wayne Maddison:harmonies would we hear melodies clearly, and so forth? I didn't
Wayne Maddison:know.
Mendel Skulski:And as far as I could tell, although this world
Mendel Skulski:of data sonification is growing really rapidly, the sonification
Mendel Skulski:of phylogeny is unprecedented. Wayne's experiment would be a
Mendel Skulski:world first.
Wayne Maddison:I wanted this to have some basis of reality. So I
Wayne Maddison:started with a real dataset of Habronattus.
Mendel Skulski:Habronattus, also known as the paradise
Mendel Skulski:jumping spiders, most of which are native to North America. And
Mendel Skulski:the characteristics examined by that dataset were the various
Mendel Skulski:sex chromosomes...
Wayne Maddison:and the issues of the the chiasma localization.
Adam Huggins:... that is, that is not a term that I am familiar
Adam Huggins:with.
Mendel Skulski:Okay, bear with me for one last piece of
Mendel Skulski:cellular biology.
Mendel Skulski:If we must.
Mendel Skulski:Remember that you've got half of your chromosomes from each of
Mendel Skulski:your parents, right?
Adam Huggins:Yes.
Mendel Skulski:So well, most of the time, the chromosomes from
Mendel Skulski:both contributors are paired up, but separate. But during
Mendel Skulski:meiosis, the moment at which sperm or eggs are being
Mendel Skulski:produced, the DNA from each pair of chromosomes is shuffled
Mendel Skulski:together, swapping the copies of genes from either parent. That's
Mendel Skulski:the actual moment of genetic recombination that gives you
Mendel Skulski:variations.
Adam Huggins:Yeah, no, no, I'm, I am still with you.
Mendel Skulski:So the chiasma is the crossover point along the
Mendel Skulski:leg of the chromosome, where that swap takes place.
Adam Huggins:Got it! So if you're picturing these cute
Adam Huggins:little X chromosomes with their little dancing legs, right, four
Adam Huggins:legs, it's like, where is that spot where they cross over
Mendel Skulski:And swap.
Adam Huggins:and swap their information. Yeah, okay.
Mendel Skulski:Wayne had data that included the physical
Mendel Skulski:measurements of where the chiasma was located for each of
Mendel Skulski:these species of Habronattus jumping spiders. It might be
Mendel Skulski:closer to the middle of the chromosome, or closer to the
Mendel Skulski:end.
Wayne Maddison:So we were looking for a correlation
Wayne Maddison:between where the chiasmata occurred along the chromosome
Wayne Maddison:and the evolution of the Y chromosome. And at first glance,
Wayne Maddison:you might think "Well, why should those even be connected?
Wayne Maddison:It's not as if you needed the chiasmata in a place to generate
Wayne Maddison:the Y." So they seemed like two different aspects of the
Wayne Maddison:chromosomes.
Wayne Maddison:There had been a prediction that there should be some sort of
Wayne Maddison:correlation in this case that you might expect to see when
Wayne Maddison:there is a Y, the chiasmata would be more towards the tips
Wayne Maddison:of the chromosomes. So that was before our study. And it turned
Wayne Maddison:out that when we looked at it, that correlation is actually
Wayne Maddison:there.
Mendel Skulski:And in general, correlations like these are
Mendel Skulski:exactly what evolutionary biologists are looking for —
Mendel Skulski:puzzling out why when one feature is like this, another
Mendel Skulski:feature tends to be like that. So Wayne decided to sonify this
Mendel Skulski:family tree of Habronattus jumping spiders, comparing the
Mendel Skulski:location of their chiasmata with the evolution of a new Y
Mendel Skulski:chromosome.
Wayne Maddison:So here's how it turned out. First, let's just
Wayne Maddison:focus on the speciation events those points where lineages
Wayne Maddison:diverge. Every time you hear a tone, that's a spider lineage
Wayne Maddison:splitting in two.
Wayne Maddison:The next layer has to do with the chiasmata, where they are in
Wayne Maddison:the chromosomes. And because where they are in the
Wayne Maddison:chromosomes is variable, like it's a continuous variable,
Wayne Maddison:you're gonna hear the tone going up and down in different amounts
Wayne Maddison:as the chiasmata slide up or down.
Wayne Maddison:So, you know, at this point, I'm thinking "Hmm, I'm not... I'm
Wayne Maddison:not really hearing any grand symphonies yet, it's sort of
Wayne Maddison:intriguing, but it's not sounding particularly orderly to
Wayne Maddison:me." But, you know, I went ahead and tried it now with the Y
Wayne Maddison:chromosomes. So here, you're going to hear a little ping,
Wayne Maddison:every time a Y chromosome evolves, and a second little
Wayne Maddison:ping a different sort, if it actually reverses back to loss
Wayne Maddison:of Y.
Wayne Maddison:And now, here are all of them — the speciation events,
Wayne Maddison:charismata, and the Y chromosome — all together.
Wayne Maddison:I mean, I have heard 20th century classical music that
Wayne Maddison:sounded a little bit like that, but it really wasn't the
Wayne Maddison:symphony that I was expecting.
Adam Huggins:I mean, I think I enjoyed that, because I have a
Adam Huggins:love of John Carpenter horror movies from like the 70s, and
Adam Huggins:80s, and 90s.
Wayne Maddison:And looking back, I can see that there were
Wayne Maddison:a few things wrong with it. The first being how it starts
Wayne Maddison:slowly, and then gets busier and busier and busier, as if
Wayne Maddison:suddenly all sorts of extra things are happening.
Mendel Skulski:Like it just gets exponentially louder and
Mendel Skulski:denser, until it suddenly ends — which isn't really the shape of
Mendel Skulski:most music that we tend to listen to.
Adam Huggins:No, not not mostly no.
Mendel Skulski:So why do you think the data sounded like
Mendel Skulski:that?
Adam Huggins:Well, speciation, right? Evolution tends to become
Adam Huggins:more complex over time. All of the phylogenetic trees that I
Adam Huggins:have ever seen begin with a single line, and split and split
Adam Huggins:and split and split and split until you've got an exponential
Adam Huggins:number more species than when you started. So yeah, it makes
Adam Huggins:perfect sense.
Mendel Skulski:But remember that these trees are constructed
Mendel Skulski:by calculating back from species that are still around today. So
Mendel Skulski:what's missing?
Adam Huggins:I mean, we're missing all of the spiders that
Adam Huggins:have gone extinct.
Mendel Skulski:Bingo.
Wayne Maddison:Part of the problem with extinct lineages is
Wayne Maddison:that we don't see them today. So we don't know exactly how many
Wayne Maddison:there are in Habronattus. And there are no known fossils, it's
Wayne Maddison:not like we can figure it out that way. But we can get an
Wayne Maddison:estimate of how many there likely would have been. And so
Wayne Maddison:one way to do this is to do a simulation of the dynamics of
Wayne Maddison:branching and extinction. And we can sort of populate all those
Wayne Maddison:lower parts of the tree where things went extinct. And that
Wayne Maddison:would make it so that it was more even in terms of the
Wayne Maddison:busyness all the way through.
Mendel Skulski:And if you you know, if you were to simulate
Mendel Skulski:those extinct lineages, it raises questions about whether
Mendel Skulski:you'd want to be able to hear the difference between the real
Mendel Skulski:and the imaginary ones. And in the end, with all of the various
Mendel Skulski:branches, you still have to deal with a lot of overlapping sound.
Wayne Maddison:The second thing that's wrong, well, there's
Wayne Maddison:probably more than one here. But the second thing that's wrong is
Wayne Maddison:that you're not able to really hear each of the voices and the
Wayne Maddison:melody that it might be playing, because I'm using the same set
Wayne Maddison:of notes all through the whole tree. And that what I really
Wayne Maddison:needed to have done was somehow distinguish all these voices so
Wayne Maddison:that you could hear them separately. So it was almost
Wayne Maddison:like I should have said, okay, at the base of the tree at the
Wayne Maddison:root, there was a divergence event. And that split between
Wayne Maddison:the woodwinds and the strings, for instance. And then on the
Wayne Maddison:lineage of strings, it split again between the bass and all
Wayne Maddison:the smaller ones, and likewise on the woodwinds. And that
Wayne Maddison:perhaps, if you had it so that the voices were distinguishable,
Wayne Maddison:you could hear them as different, then you could more
Wayne Maddison:easily hear the little melodies that were happening as chiasmata
Wayne Maddison:and Y chromosome evolution followed each other. But I
Wayne Maddison:realized, "Oh, this is going to take a lot more work than I'm
Wayne Maddison:ready to do." There were lots of spiders waiting for me to study
Wayne Maddison:them.
Mendel Skulski:And so, four years ago, that's basically
Mendel Skulski:where the story would have ended — with a beautiful metaphor, and
Mendel Skulski:a not quite as beautiful sonification. And I wasn't
Mendel Skulski:satisfied with that.
Mendel Skulski:"I... I was wondering...
Mendel Skulski:so I asked Wayne, if I could take my own spin at it.
Mendel Skulski:"And sort of try to take it to the next step as part of this
Mendel Skulski:project."
Wayne Maddison:Sure, I think that could be fun.
Mendel Skulski:And so I tried. But after a few very
Mendel Skulski:enthusiastic but ultimately false starts, I too realized
Mendel Skulski:that this was a way bigger project than I had anticipated.
Mendel Skulski:Not least because at the time I, I didn't really know anything
Mendel Skulski:about making music. But it was this project that was my
Mendel Skulski:motivation to learn. And even while this project was on the
Mendel Skulski:backburner, I fell in love with learning the patterns of music,
Mendel Skulski:and with the principles of electronic synthesis. I fell in
Mendel Skulski:love with making music just for its own sake.
Adam Huggins:I enjoy listening to the music you make.
Mendel Skulski:Thank you. You know, looking back, I would say
Mendel Skulski:that this was one of my Divide Creek moments. Like this story,
Mendel Skulski:put me on a path. And I think I'll be on it for the rest of my
Mendel Skulski:life.
Adam Huggins:I know that feeling. Yeah.
Mendel Skulski:But the other part was that in order to make
Mendel Skulski:it happen, I needed help. In fact, I needed a whole team.
Adam Huggins:Mendel that's called a band.
Mendel Skulski:Well, allow me to introduce Duncan Geere.
Duncan Geere:Hello, what's up party people?
Mendel Skulski:And Miriam Quick.
Miriam Quick:The previous slide where we have the phylogenetic
Miriam Quick:tree, does the horizontal axis represent time on a linear
Miriam Quick:scale? Or does it represent some other degree of change,
Mendel Skulski:Duncan and Miriam are information
Mendel Skulski:designers, and they're the hosts of a really wonderful podcast
Mendel Skulski:that's completely dedicated to data sonification. That's called
Mendel Skulski:Loud Numbers. Next,
Damien de Vienne:There must have been a molecular clock.
Mendel Skulski:This is Damian de Vienne, evolutionary
Mendel Skulski:biologist at the University of Lyon.
Damien de Vienne:So you have a branch length usually represent
Damien de Vienne:the number of mutations that occur along these branch. And
Damien de Vienne:then if you have a hypothesis of how fast mutation accumulates,
Damien de Vienne:then you can transform that to time,
Mendel Skulski:I did actually end up finding one other
Mendel Skulski:precedent for phylogenetic sonification after Wayne's
Mendel Skulski:original attempt. It wasn't exactly a piece of music, but
Mendel Skulski:more like a proof of concept. Damien was a co author, along
Mendel Skulski:with his friend, Henri,
Henri Boutin:We've done a little batch in pure data, which
Henri Boutin:was sort of a test just to see if it's possible to sonify trees
Mendel Skulski:This is Henri Boutin, acoustic researcher at
Mendel Skulski:like that.
Mendel Skulski:IRCAM. That proof of concept that I found was really just a
Mendel Skulski:side project between him and Damien.
Henri Boutin:We are friends since a lot of time. We used to
Henri Boutin:do music and things like that. But we've never, we've never
Henri Boutin:worked together. And this was the first opportunity to work
Henri Boutin:together.
Mendel Skulski:And finally, local wizard slash generative
Mendel Skulski:music researcher and PhD student, Simon Overstall.
Simon Overstall:Good morning.
Mendel Skulski:Who joined me in Pacific timezone solidarity
Mendel Skulski:whenever we met with our European collaborators.
Simon Overstall:I need another coffee now.
Adam Huggins:So what did you do with this incredible team of
Adam Huggins:people?
Mendel Skulski:Well, I think it's probably better if I spare
Mendel Skulski:you the prototypes and the meetings and the revisions, I'll
Mendel Skulski:just jump straight to what we ended up with. Because just like
Mendel Skulski:Wayne's version, I'm going to need to explain what you're
Mendel Skulski:about to hear.
Adam Huggins:Yeah, all of the all of the best music requires
Adam Huggins:extensive exposition, and I am here for it.
Mendel Skulski:Well, in this case, yes.
Adam Huggins:I'm all ears.
Mendel Skulski:So here we're using the same underlying data
Mendel Skulski:as Wayne. We've got these species of Habronattus jumping
Mendel Skulski:spiders, we know the location of their chiasmata and whether or
Mendel Skulski:not they have Y chromosomes. But the difference between our
Mendel Skulski:interpretations starts with how we represent time.
Adam Huggins:Okay.
Mendel Skulski:The tree itself is the same, and we're not
Mendel Skulski:simulating any extinct species. We're just approaching playback
Mendel Skulski:in kind of a different way.
Adam Huggins:But what do you mean by that?
Mendel Skulski:So time still flows from the past to the
Mendel Skulski:present. But to avoid that exponential cacophony of all the
Mendel Skulski:parallel branches, we decided not to play all the lineages at
Mendel Skulski:the same time,
Adam Huggins:Ah that makes sense. So what did you do
Adam Huggins:instead?
Mendel Skulski:You can kind of think about it as a series of
Mendel Skulski:Divide Creeks. We always start at the same place, like the
Mendel Skulski:headwaters of the stream, the root of the tree.
Adam Huggins:The last common ancestor between all of these
Adam Huggins:species
Mendel Skulski:Yeah, exactly. So we follow that one lineage
Mendel Skulski:until at some point, it splits in two. Then we follow those two
Mendel Skulski:branches. until they both reach the present day. And because the
Mendel Skulski:scaling of time by branch length isn't linear, one branch will
Mendel Skulski:probably reach its end before the other one. But once they've
Mendel Skulski:both finished, we pause and cycle back to the beginning.
Wayne Maddison:So it's basically that they're just two
Wayne Maddison:voices at any single point. Got it. Okay.
Mendel Skulski:And each of these trips from the root to the
Mendel Skulski:two tips, represents approximately 5 million years of
Mendel Skulski:evolution.
Adam Huggins:Wow. Okay. And how long does it take in like real
Adam Huggins:time.
Mendel Skulski:It kind of depends on which branch are
Mendel Skulski:listening to, but a few seconds to tens of seconds.
Adam Huggins:Got it.
Mendel Skulski:Now, because we're only listening to the
Mendel Skulski:branches of this tree one pair at a time, it takes a lot longer
Mendel Skulski:to hear the whole thing. But I also think that makes it a lot
Mendel Skulski:more musical.
Adam Huggins:Sure. But what are we actually hearing as we move
Adam Huggins:down the creek? So to speak.
Mendel Skulski:So every time a lineage reaches a point of
Mendel Skulski:speciation, where its path might have gone one way or another, it
Mendel Skulski:plays a chord. Or more precisely, it plays an arpeggio.
Mendel Skulski:Which is like a chord with all the notes spread out. And the
Mendel Skulski:notes that are in that arpeggio depend on which daughter lineage
Mendel Skulski:our current branch followed, either descending to the right
Mendel Skulski:or to the left along the tree.
Adam Huggins:What do right and left mean in this situation?
Mendel Skulski:So when you're drawing a phylogenetic tree, the
Mendel Skulski:order of the branches, and really what's left and what's
Mendel Skulski:right... it's all pretty much arbitrary. So this is just a way
Mendel Skulski:of having a simple rule about the pitch of the notes that
Mendel Skulski:makes each unique branching path, a unique melody.
Adam Huggins:Okay, yeah, left, right, one way, the other way.
Mendel Skulski:One way, the other way.
Adam Huggins:And so each unique species plays out as a unique
Adam Huggins:series of notes.
Mendel Skulski:Yeah. Yeah, they all start in the same place, but
Mendel Skulski:eventually find themselves somewhere different.
Adam Huggins:So what is the rule? What are the actual notes
Adam Huggins:in that melody? What do they mean?
Mendel Skulski:Well, the chord that you'll hear the arpeggio is
Mendel Skulski:only ever at most four notes. And that's telling the story of
Mendel Skulski:four generations. So the great great grandmother note is
Mendel Skulski:forgotten. And the daughter note is added. Depending on that,
Mendel Skulski:quote, unquote, direction of descendants, a daughter note
Mendel Skulski:might be either a minor seventh above the pitch of its mother.
Mendel Skulski:Or a perfect fifth below.
Adam Huggins:Okay, so as we go, we forget a little bit about our
Adam Huggins:ancestors. We may not know exactly what those species were,
Adam Huggins:or what their names were or what their dances were like.
Mendel Skulski:Yeah. But we do still have some sense of where
Mendel Skulski:we came from.
Adam Huggins:Yeah.
Mendel Skulski:Who we came from.
Adam Huggins:Yeah.
Mendel Skulski:Also, it's important that I point out that
Mendel Skulski:the arpeggio isn't in order of oldest to youngest, it's just in
Mendel Skulski:note order, either going up or down.
Wayne Maddison:And if it's descending or ascending, then it
Wayne Maddison:just gets put in its place. Okay.
Mendel Skulski:And to keep things musical, the notes will
Mendel Skulski:wrap to a four octave range.
Adam Huggins:Okay.
Mendel Skulski:But the melody isn't actually the important
Mendel Skulski:part.
Adam Huggins:That's what drummers tell me.
Mendel Skulski:It's true. So in this case, it's really just
Mendel Skulski:describing the shape of the tree. What we're trying to hear
Mendel Skulski:is a correlation in the data, a connection between the evolution
Mendel Skulski:of a Y chromosome and the location of the chiasmata —
Mendel Skulski:these two seemingly unconnected aspects of jumping spider
Mendel Skulski:biology.
Adam Huggins:Oh, yeah. Okay.
Mendel Skulski:So what I want you to pay attention to is the
Mendel Skulski:envelope of each note. That is, the shape of the sound — either
Mendel Skulski:short, and plucky or long and sustained.
Adam Huggins:Right. Waaauwww. And what does the envelope tell
Adam Huggins:us?
Mendel Skulski:That's the position of the chiasmata, those
Mendel Skulski:crossover points on the chromosomes. The closer the
Mendel Skulski:chiasma gets to the tip of the chromosome, the pluckier the
Mendel Skulski:note.
Adam Huggins:Got it.
Mendel Skulski:And the evolution of a new Y chromosome
Mendel Skulski:is signaled by a few things as they arrive along the branch.
Mendel Skulski:What you'll first hear is a triangle ringing out.
Mendel Skulski:Then when you hear the arpeggio, you'll notice that the direction
Mendel Skulski:will change from ascending to descending. So what I want you
Mendel Skulski:to listen for is how often pluck your notes are arranged in a
Mendel Skulski:descending arpeggio.
Mendel Skulski:Remember the sound of a triangle is your cue that a Y chromosome
Mendel Skulski:has arrived.
Adam Huggins:Okay. Will there be a quiz at the end?
Mendel Skulski:No, you can just enjoy yourself.
Adam Huggins:Okay.
Mendel Skulski:Anyhow, that's, that's the main correlation that
Mendel Skulski:we were trying to listen for. But we didn't stop there. Next
Mendel Skulski:we took Wayne's suggestion that the voices really ought to
Mendel Skulski:evolve more than just in terms of melody, but also, timbre,
Adam Huggins:Timbre, so like the character of the sound. So
Adam Huggins:do they split into like the strings and the woodwinds? And
Adam Huggins:so on and so forth?
Mendel Skulski:Well, not exactly.
Adam Huggins:So what I gather from all of that... is that
Adam Huggins:things are changing.
Mendel Skulski:That's the case. The more the spiders mutate, the
Mendel Skulski:more they sound like different instruments. And this is
Mendel Skulski:actually like a way of describing the evolutionary
Mendel Skulski:distance along a branch. And one thing I find interesting is how
Mendel Skulski:suddenly these changes can sometimes happen. It could be an
Mendel Skulski:artifact of how we've processed the data. But it also seems that
Mendel Skulski:evolution can be a lot less gradual than we usually expect.
Adam Huggins:Yeah, that reminds me of a concept that we call
Adam Huggins:punctuated equilibrium, which is just that, like in evolution,
Adam Huggins:things sort of can stay very stable for quite some time. And
Adam Huggins:then suddenly, there's a bunch of fairly large changes, right?
Adam Huggins:The environment shifted dramatically in some way or
Adam Huggins:there was a development of some kind of mutation. And everything
Adam Huggins:happens all at once.
Mendel Skulski:Exactly, yeah, it kind of comes out of nowhere.
Mendel Skulski:And another kind of subtle thing you might notice is that where
Mendel Skulski:the voices are positioned in stereo, mimics their location on
Mendel Skulski:the tree. So you'll hear them moving around your head, as they
Mendel Skulski:follow their branches, getting a little quieter as they go out
Mendel Skulski:towards the tips.
Wayne Maddison:Of course, of course, stereo can be part of
Wayne Maddison:this, I didn't think of that.
Mendel Skulski:So I hope you're wearing headphones.
Adam Huggins:Never listen to Future Ecologies without your
Adam Huggins:headphones.
Mendel Skulski:We really appreciate it.
Mendel Skulski:Lastly, to mark time, between each cycle of dividing creeks,
Mendel Skulski:before we return to the root of the tree, you'll hear a short
Mendel Skulski:clip of one of our spider friends singing.
Mendel Skulski:We processed that through a synthesizer that models the
Mendel Skulski:physics of a plucked string, providing a kind of drone for
Mendel Skulski:the entire piece — as though the spiders themselves are
Mendel Skulski:strumming.
Wayne Maddison:So this is the spider playing a guitar, so to
Wayne Maddison:speak. Wow.
Adam Huggins:That's majestic. I... I love that.
Mendel Skulski:And now, Spiders Song, take two, in its entirety.
Wayne Maddison:That is really cool. It's... it's really
Wayne Maddison:beautiful. That's not at all what I would have expected. The
Wayne Maddison:sense of how how rich are the spiders in these lineages comes
Wayne Maddison:across, you know, it's it's not... it's... the multi
Wayne Maddison:dimensionality of it becomes clear, right of all of this.
Adam Huggins:I feel like I want a whole collection of different
Adam Huggins:phylogenies sonified like this, and just put them on and let my
Adam Huggins:brain simmer
Wayne Maddison:The thing that I'm trying to locate is whether
Wayne Maddison:or not the pings... how they're connected with one another, and
Wayne Maddison:they're occasional enough that it's hard to find them. Right,
Wayne Maddison:that could just be because the data is not showing it clearly.
Wayne Maddison:But the other thing is, then I also felt like, it was the sort
Wayne Maddison:of thing just like any music — that there's a little bit of a
Wayne Maddison:learning process as to how to hear a new sort of music, where
Wayne Maddison:you start to be able to notice the pattern that you hadn't
Wayne Maddison:noticed before, which actually is a lot like the way science
Wayne Maddison:works, right? You know, you get started and you think that
Wayne Maddison:there's no pattern there. And it's actually just that you're
Wayne Maddison:not used to seeing it.
Wayne Maddison:Thing about using statistics is that if you have the right sort
Wayne Maddison:of data, lots of it, than you almost don't need statistics,
Wayne Maddison:because it just like "well, there it is." But the more
Wayne Maddison:subtle is the pattern, the fewer the replicates there are, the
Wayne Maddison:more that processing and examining and sifting is
Wayne Maddison:important to be able to actually recognize that signal there. And
Wayne Maddison:I think in this case, yeah, there's probably a pattern here
Wayne Maddison:between sex chromosome evolution and chiasma localization, but
Wayne Maddison:it's not a ton of replicates. And it's just two features
Wayne Maddison:talking to one another, so to speak.
Wayne Maddison:On the other hand, that's when if you had something like, you
Wayne Maddison:know, DNA sequence data across the genome or something, there's
Wayne Maddison:probably a way to do it like, yeah, you'd still have to think
Wayne Maddison:a lot about how to turn it into sound. But there are probably
Wayne Maddison:things that once you get the right way to do it, you don't
Wayne Maddison:need to learn anything to be able to hear the patterns,
Wayne Maddison:right? It'll just jump right out at you.
Mendel Skulski:So is that a symphony? No. And I think that's
Mendel Skulski:okay. This isn't supposed to be the way we listen to phylogeny,
Mendel Skulski:to the music of evolution. It's just a few ideas for how we
Mendel Skulski:could. And if you want to build on this one, I'm making the
Mendel Skulski:whole patch open-source. That'll be up on our website,
Adam Huggins:futureecologies.net
Adam Huggins:I can't wait to hear some spider remixes, or even some other
Adam Huggins:phylogenies put through this system.
Mendel Skulski:Me neither. But, you know, maybe first, it's
Mendel Skulski:worth asking, what's the point of this whole exercise?
Adam Huggins:I can totally be the person that asked that,
Adam Huggins:Mendel. What is the point?
Mendel Skulski:So I guess I just want to make a distinction
Mendel Skulski:that there are really two big types of sonification. And
Mendel Skulski:across all of them, the goal is always to get the data to speak.
Mendel Skulski:But in my case, the key is that I already knew the story that I
Mendel Skulski:wanted to tell. And I wanted it to sound good, right? I wanted
Mendel Skulski:it to be at least a little musical.
Adam Huggins:You wanted to tell a story and you wanted it to
Adam Huggins:sound good, which is why you make a podcast, presumably.
Mendel Skulski:That's why we're here! And the data were going to
Mendel Skulski:be there no matter what, right? And I realized that being able
Mendel Skulski:to really hear them, to hear the meaning and the patterns was so
Mendel Skulski:dependent on how I... how I tuned the whole system towards
Mendel Skulski:those. But if I were actually trying to do science, to
Mendel Skulski:discover something new, it would have been a completely different
Mendel Skulski:exercise. And that's really the difference between the
Mendel Skulski:explanatory and the exploratory.
Adam Huggins:So yeah, it sounds like, you know, to me that you
Adam Huggins:were interested in the challenge. You were interested
Adam Huggins:in developing your skills musically. And you were
Adam Huggins:interested in telling this really interesting story.
Mendel Skulski:Yeah.
Adam Huggins:But, you know, devil's advocate over here. Does
Adam Huggins:this have any scientific utility, like, could data
Adam Huggins:sonification for phylogeny be useful?
Wayne Maddison:For a lot of things we are still in an
Wayne Maddison:exploratory mode, and we don't have the hypotheses yet there.
Wayne Maddison:And, you know, maybe it'll turn out that you somehow tweak this
Wayne Maddison:so that it handles genomes in a particular way, and it's
Wayne Maddison:something to do with, I don't know the shapes of proteins or
Wayne Maddison:something like that. And you start playing it, and people
Wayne Maddison:start noticing patterns from the way it sounds that then turn
Wayne Maddison:into testable ideas in the laboratory. And you could see
Wayne Maddison:that with with genomic data as being a distinct possibility!
Wayne Maddison:You know, in your sonification, like, just as with all science,
Wayne Maddison:there has to be a little bit of imposition of our ideas. Because
Wayne Maddison:if we don't have ideas that we're slightly imposing on
Wayne Maddison:nature, we can't even make sense of it all, right? It's like,
Wayne Maddison:this is a dialogue between the telling and the listening. And
Wayne Maddison:you don't want to go too far, you don't want to have it to be
Wayne Maddison:on your head — the set of ideas, or just your hypotheses with no
Wayne Maddison:grounding, no listening to what nature is trying to tell us. But
Wayne Maddison:you have to do that to some extent. And when the data are a
Wayne Maddison:little bit sparse, or nature hasn't given you a lot of
Wayne Maddison:replicates or something like that, yeah, then you're going to
Wayne Maddison:be able to hear your own voice a little bit more strongly, and
Wayne Maddison:nature's a little bit less. When you got tons of data, or there's
Wayne Maddison:a really strong pattern there, then your voice is going to
Wayne Maddison:start to fade a little bit, as it should, and you're going to
Wayne Maddison:hear nature speak more clearly. But it's always going to be a
Wayne Maddison:balance.
Wayne Maddison:And you know, we can't remove ourselves from science, the
Wayne Maddison:observer is always there. The preconceptions that the observer
Wayne Maddison:has, will always be there. But hopefully, there'll be enough
Wayne Maddison:listening that nature's always there whispering, to keep us at
Wayne Maddison:least somewhat connected to reality.
Adam Huggins:This is, I don't know if it's tangent, but I
Adam Huggins:studied experimental film as my undergrad. I'm a film school
Adam Huggins:dropout. And I loved experimental film, not because I
Adam Huggins:would stare at it really hard. And think about it really hard.
Adam Huggins:And try to derive the meaning from all of the kind of madness
Adam Huggins:up there on the screen. No, I would sit there watching those
Adam Huggins:films, often late at night, in a lecture hall with very few
Adam Huggins:people in it. And I would just let them wash over me and allow
Adam Huggins:them to do things to my brain that other narrative, cinema
Adam Huggins:couldn't do, right? Because it's so programmed to tell you this
Adam Huggins:particular thing, or that particular thing. And I liked
Adam Huggins:that about this, that, you know, somebody has put effort
Adam Huggins:obviously into into making it beautiful, and to making it
Adam Huggins:comprehensible to us. But there's a lot of meaning in
Adam Huggins:there. And it's not at all clear exactly what it is from the
Adam Huggins:jump, you have to let it wash over you. And maybe we'll learn
Adam Huggins:something about the phylogeny of jumping spiders. Or maybe what,
Adam Huggins:you know, jumps out at us will be something entirely different.
Adam Huggins:Thank you for giving me the opportunity to be my brain in
Adam Huggins:the music of jumping spiders.
Mendel Skulski:You're welcome. And yeah, the science is just
Mendel Skulski:one part of it. I felt like my job was to honor the beauty of
Mendel Skulski:these little spiders.
Adam Huggins:They are quite beautiful. I guess that raises
Adam Huggins:the question like these spiders have presumably evolved all of
Adam Huggins:these things to appeal to one another. Why do you think that
Adam Huggins:they're so captivating to us as well?
Mendel Skulski:At some level, it's a coincidence, right? Like,
Mendel Skulski:it's just happenstance that female jumping spiders seem to
Mendel Skulski:respond to the same sort of things that we do, right, like
Mendel Skulski:flashy colors, and interesting vibrations, just like us. So
Mendel Skulski:male jumping spiders have evolved to be dazzling —
Mendel Skulski:dazzling in ways that appeal to both of us. And I think, over
Mendel Skulski:evolutionary time, jumping spiders are literally being
Mendel Skulski:shaped by you might say, their own attention to beauty.
Wayne Maddison:You know, science is typically defined by
Wayne Maddison:the very rigorous style of testing that we do. But there's
Wayne Maddison:the other half of that, which is the generation of ideas that we
Wayne Maddison:then subsequently test. And that generation of ideas doesn't have
Wayne Maddison:to come in any rigorous way it can come from anything. And an
Wayne Maddison:attention to beauty, that's jostling the way we look at the
Wayne Maddison:world. It's giving us surprises, it's helping us to notice things
Wayne Maddison:that we would have never noticed. An attention to beauty
Wayne Maddison:may make us think about nature in ways that generate... that
Wayne Maddison:generate new ideas that we can then test, right. It's a source
Wayne Maddison:of the creativity that allows science to proceed. So that
Wayne Maddison:actually has a benefit on discovering truth.
Wayne Maddison:Most things that I've discovered, either about the
Wayne Maddison:spiders themselves, or about how we approach nature as
Wayne Maddison:scientists, the methods we use, those have useful consequences.
Wayne Maddison:You know, we'll learn about how the world works and that can
Wayne Maddison:help us survive in fact. But a lot of my pursuit of science is
Wayne Maddison:connected with this pursuit of beauty. It's... it's a
Wayne Maddison:motivation. It's... in some ways, it's almost as if the
Wayne Maddison:science is a byproduct.
Wayne Maddison:You know, I fell in love with the beauty of the world. When I
Wayne Maddison:looked at that jumping spider, Phiddy, I saw a part of myself
Wayne Maddison:there, there was a sense of something in common. And I know
Wayne Maddison:that I fell in love first with a jumping spider. But I also know
Wayne Maddison:it could have been something else, it could have been a
Wayne Maddison:fungus, it could have been a beetle, it could have been an
Wayne Maddison:earthworm. I think if you look closely enough, you can really
Wayne Maddison:fall in love with just about anything.
Wayne Maddison:As I've gone around the world, and found these amazingly
Wayne Maddison:beautiful spiders, many of which I know are not yet described by
Wayne Maddison:scientists, I wonder, "Am I the first person to see this sort of
Wayne Maddison:spider? Like, has anybody ever looked at this sort of spider
Wayne Maddison:before." But at the same time, as I do that, I also wonder, "Am
Wayne Maddison:I going to be the last to see them alive?" Because many of the
Wayne Maddison:environments that we have out there are disappearing, the
Wayne Maddison:forests are being cut down, habitat loss, and now climate
Wayne Maddison:change is having an effect everywhere. As a scientist, I
Wayne Maddison:think the loss of the species is a loss of data, of course — like
Wayne Maddison:we won't be able to learn from them anymore. But it's also
Wayne Maddison:simply a loss of beauty.
Wayne Maddison:You know, you have to think about how we're going to turn
Wayne Maddison:that around. And we could say, well, we need to do it because
Wayne Maddison:of this. And we could sort of impose a sense of morally we
Wayne Maddison:need to do this. But I don't think people tend to respond
Wayne Maddison:well to an imposed ethics like that. In fact, I tend to think
Wayne Maddison:that we don't choose what we want to do by our ethics, we
Wayne Maddison:tend to retrofit our ethics to what we want to do. So if we're
Wayne Maddison:really going to change the world, we have to basically
Wayne Maddison:change what we care about, change our desires. We have to
Wayne Maddison:fall in love with the planet. We have to fall in love with all
Wayne Maddison:the beauty that's here. So as a scientist, I feel I have a moral
Wayne Maddison:responsibility, not just to talk about results, but to talk about
Wayne Maddison:beauty. I have to talk about more than the truths that I
Wayne Maddison:uncover.
Mendel Skulski:For all of us, scientists, musicians, and maybe
Mendel Skulski:even jumping spiders — our sense of beauty is part of our
Mendel Skulski:intrinsic motivation. Each of us, in our own way, witnesses
Mendel Skulski:the world, and responds to it. Because there is no such thing
Mendel Skulski:as beauty without an audience.
Mendel Skulski:This series of Future Ecologies was produced by me, Mendel
Mendel Skulski:Skulski, but not without help from so many others. Thanks to
Mendel Skulski:my amazing sonification collaborators, Damien de Vienne,
Mendel Skulski:Miriam Quick, Duncan Geere, Simon Overstall, and Henri
Mendel Skulski:Boutin. And if you're into this sort of thing, then you'll love
Mendel Skulski:Duncan and Miriam's podcast, Loud Numbers.
Mendel Skulski:Thanks, of course, to my co host, Adam Huggins and our
Mendel Skulski:guest, Wayne Maddison. Our sonification was produced in
Mendel Skulski:Max/MSP using phylogenetic data gathered by Wayne Maddison and
Mendel Skulski:Dr. Genevieve Leduc-Robert. For the source code, the full length
Mendel Skulski:track, and to learn more about how it works, head to
Mendel Skulski:futureecologies.net.
Mendel Skulski:All of our supporters on Patreon will be getting even more behind
Mendel Skulski:the scenes and other bonus content. To get access, join our
Mendel Skulski:community at patreon.com/futureecologies.
Mendel Skulski:All the jumping spider audio recordings you heard came
Mendel Skulski:courtesy of Dr. Damian Elias and his lab at UC Berkeley.
Mendel Skulski:Sonification examples came from Chris Chafe, the Chandra X-Ray
Mendel Skulski:Observatory, Mark Evanstein, and Mark Temple.
Mendel Skulski:Special thanks to Ruby Singh, Vincent van Haaff, Teo Kaye,
Mendel Skulski:Erin Robinsong, Cait Hurley, Kieran Fanning, and to Lobe
Mendel Skulski:Spatial Sound Studio — Kate de Lorme, Hannah Acton, Ian Wyatt,
Mendel Skulski:Eric Chad, and Sev Shaban. And thanks to Leya Tess for the
Mendel Skulski:amazing illustrations.
Mendel Skulski:Funding for this series was provided by the Canada Council
Mendel Skulski:for the Arts. But ongoing support for this podcast comes
Mendel Skulski:from listeners just like you. To keep this show going. join our
Mendel Skulski:community at patreon.com/futureecologies. And
Mendel Skulski:if you like what we're doing, please just spread the word. It
Mendel Skulski:really helps.
Mendel Skulski:Till next time, thanks for listening.